Showing results 73 to 84 of 93 total
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Journal articles
Amélie Leforestier, Françoise Livolant. Structure of toroidal DNA collapsed inside the phage capsid. Proceedings of the National Academy of Sciences, 2009, 106 (23), pp.9157-9162. ⟨10.1073/pnas.0901240106⟩. ⟨hal-04896725⟩
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Ciprian Iliescu, Guillaume Tresset, Guolin Xu. Dielectrophoretic field-flow method for separating particle populations in a chip with asymmetric electrodes. Biomicrofluidics, 2009, 3 (4), ⟨10.1063/1.3251125⟩. ⟨hal-04896727⟩
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Journal articles
Amélie Leforestier, Aurélie Bertin, Jacques Dubochet, Karsten Richter, Nathalie Sartori Blanc, et al.. Expression of chirality in columnar hexagonal phases or DNA and nucleosomes. Comptes Rendus. Chimie, 2008, 11 (3), pp.229-244. ⟨10.1016/j.crci.2007.09.008⟩. ⟨hal-04896800⟩
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Guillaume Tresset. Generalized Poisson-Fermi formalism for investigating size correlation effects with multiple ions. Physical Review E : Statistical, Nonlinear, and Soft Matter Physics, 2008, 78 (6), ⟨10.1103/PhysRevE.78.061506⟩. ⟨hal-04896845⟩
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Françoise Livolant, Stéphanie Mangenot, Amélie Leforestier, Aurélie Bertin, Marta de Frutos, et al.. Are liquid crystalline properties of nucleosomes involved in chromosome structure and dynamics?. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 2006, 364 (1847), pp.2615-2633. ⟨10.1098/rsta.2006.1843⟩. ⟨hal-04897025⟩
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Aurélie Bertin, Amélie Leforestier, Dominique Durand, Françoise Livolant. Role of Histone Tails in the Conformation and Interactions of Nucleosome Core Particles. Biochemistry, 2004, 43 (16), pp.4773-4780. ⟨10.1021/bi036210g⟩. ⟨hal-04897298⟩
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Journal articles
Ashraf Al-Amoudi, Jiin-Ju Chang, Amélie Leforestier, Alasdair Mcdowall, Laurée Michel Salamin, et al.. Cryo-electron microscopy of vitreous sections. EMBO Journal, 2004, 23 (18), pp.3583-3588. ⟨10.1038/sj.emboj.7600366⟩. ⟨hal-04897236⟩
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S. Mangenot, A. Leforestier, D. Durand, F. Livolant. Phase diagram of nucleosome core particles. Journal of Molecular Biology, 2003, 333 (5), pp.907-916. ⟨10.1016/j.jmb.2003.09.015⟩. ⟨hal-04897405⟩
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Stéphanie Mangenot, Amélie Leforestier, Dominique Durand, Françoise Livolant. X-ray diffraction characterization of the dense phases formed by nucleosome core particles. Biophysical Journal, 2003, 84 (4), pp.2570-2584. ⟨10.1016/S0006-3495(03)75062-0⟩. ⟨hal-04897449⟩
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Journal articles
Stéphanie Mangenot, Amélie Leforestier, Patrice Vachette, Dominique Durand, Françoise Livolant. Salt-induced conformation and interaction changes of nucleosome core particles. Biophysical Journal, 2002, 82 (1), pp.345-356. ⟨10.1016/S0006-3495(02)75399-X⟩. ⟨hal-04897508⟩
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Nathalie Sartori Blanc, Alfred Senn, Amélie Leforestier, Françoise Livolant, Jacques Dubochet. DNA in human and stallion spermatozoa forms local hexagonal packing with twist and many defects. Journal of Structural Biology, 2001, 134 (1), pp.76-81. ⟨10.1006/jsbi.2001.4365⟩. ⟨hal-04897750⟩
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Journal articles
Marta de Frutos, Eric Raspaud, Amélie Leforestier, Françoise Livolant. Aggregation of nucleosomes by divalent cations. Biophysical Journal, 2001, 81 (2), pp.1127-1132. ⟨10.1016/S0006-3495(01)75769-4⟩. ⟨hal-04897736⟩
Tresset, G 2024 Glass-like relaxation dynamics during the disorder-order transition of viral nucleocapsids.
Tresset, G 2023 Antivirals alter the kinetic assembly pathway and elastic properties of Hepatitis B virus capsids.
Chang, L-H, Ghosh, S, Papale, A, Luppino, J M, Miranda, M, Piras, V, Degrouard, J, Edouard, J, Poncelet, M, Lecouvreur, N, Bloyer, S, Leforestier, A, Joyce, E F, Holcman, D, and Noordermeer, D 2023 Multi-feature clustering of CTCF binding creates robustness for loop extrusion blocking and Topologically Associating Domain boundaries. Nature Communications, 14(1): 5615. DOI: https://doi.org/10.1038/s41467-023-41265-y
Jeon, W, Choi, C, Cheon, J, Lee, J, Lansac, Y, and Jang, Y H 2023 Narrow–Wide Copolymers Designed for Red-Selective Absorption by Time-Dependent Density Functional Theory Calculations. The Journal of Physical Chemistry C, 127(31): 15290–15299. DOI: https://doi.org/10.1021/acs.jpcc.3c01587
Kra, K, Li, S, Gargowitsch, L, Degrouard, J, Pérez, J, Zandi, R, Bressanelli, S, and Tresset, G 2023 Energetics and Kinetic Assembly Pathways of Hepatitis B Virus Capsids in the Presence of Antivirals. ACS Nano, 17(13): 12723–12733. DOI: https://doi.org/10.1021/acsnano.3c03595
Chaupard, M, Degrouard, J, Li, X, Stéphan, O, Kociak, M, Gref, R, and de Frutos, M 2023 Nanoscale Multimodal Analysis of Sensitive Nanomaterials by Monochromated STEM-EELS in Low-Dose and Cryogenic Conditions. ACS Nano, 17(4): 3452–3464. DOI: https://doi.org/10.1021/acsnano.2c09571
Leforestier, A 2023 Order and disorder in DNA toroids.
Tresset, G 2023 Viruses as bioinspired nanocapsules.
Leforestier, A 2023 Morphogenèse des tores d’ADN condensé : vers la microscopie électronique en phase liquide.
Gaichies, T 2023 Entraînement d’air par un jet incliné.
Leforestier, A 2023 Optimization of cryo-tomography of vitreous sections for tissue and cell imaging.
Leforestier, A 2023 Cryo-electron tomography reveals chromatin landscape at the nanometer scale in situ.
Leforestier, A 2023 Role of surfactants in electron cryo-microscopy thin film preparation.
Michon, B, López-Sánchez, U, Degrouard, J, Nury, H, Leforestier, A, Rio, E, Salonen, A, and Zoonens, M 2023 Role of surfactants in electron cryo-microscopy film preparation. Biophysical Journal, 122(10): 1846–1857. DOI: https://doi.org/10.1016/j.bpj.2023.04.016
Leforestier, A 2023 Electrostatic zipper tunes the DNA double helix conformation and the toroid morphology.
Leforestier, A 2023 Electrostatic zipper in toroidal DNA condensates.
Leforestier, A 2023 Cryo-electron tomography reveals chromatin landscape at the nanometer scale in situ.
Chhetri, K B, Jang, Y H, Lansac, Y, and Maiti, P K 2023 DNA groove preference shift upon phosphorylation of a protamine-like cationic peptide. Physical Chemistry Chemical Physics, 25(45): 31335–31345. DOI: https://doi.org/10.1039/D3CP03803C
Tresset, G 2023 Energetics and kinetic assembly pathways of Hepatitis B virus in the presence of antivirals.
Delecourt, G, Plet, L, Guen, Y L, Tezgel, O, Tresset, G, Midoux, P, Montier, T, Bennevault, V, and Guégan, P 2022 Synthesis of Double Hydrophilic Block Copolymers Poly(2‐isopropyl‐2‐oxazoline‐ b ‐ethylenimine) and their DNA Transfection Efficiency. Macromolecular Bioscience, 2200296. DOI: https://doi.org/10.1002/mabi.202200296
Leforestier, A 2022 Optimisation de la cryo-microscopie de sections vitreuses pour l’imagerie cellulaire.
Leforestier, A 2022 Morphogénèse et ultrastructure des tores d’ADN condensé.
Leforestier, A 2022 La cryo-microscopie électronique pour l’imagerie en physique des matériaux hydratés.
Leforestier, A 2022 Cryo-electron tomography reveals chromatin landscape at the nanometer scale in situ.
Usma, C L, Mariot, S, Goldmann, C, Roché, M, Salonen, A, and Tresset, G 2022 Fluorescent Marangoni Flows under Quasi-Steady Conditions. Langmuir, 38(30): 9129–9135. DOI: https://doi.org/10.1021/acs.langmuir.2c00619
Choi, C, de Izarra, A, Han, I, Jeon, W, Lansac, Y, and Jang, Y H 2022 Hard-Cation-Soft-Anion Ionic Liquids for PEDOT:PSS Treatment. The Journal of Physical Chemistry B, 126(7): 1615–1624. DOI: https://doi.org/10.1021/acs.jpcb.1c09001
Chhetri, K B, Jang, Y H, Lansac, Y, and Maiti, P K 2022 Effect of phosphorylation of protamine-like cationic peptide on the binding affinity to DNA. Biophysical Journal, 121(24): 4830–4839. DOI: https://doi.org/10.1016/j.bpj.2022.09.025
Harastani, M, Eltsov, M, Leforestier, A, and Jonic, S 2022 TomoFlow: Analysis of Continuous Conformational Variability of Macromolecules in Cryogenic Subtomograms based on 3D Dense Optical Flow. Journal of Molecular Biology, 434(2): 167381. DOI: https://doi.org/10.1016/j.jmb.2021.167381
Leforestier, A 2022 Order and disporder in DNA toroids.
Kra, K 2022 Self-assembly kinetic pathways of hepatitis B virus capsids in the presence or not of antivirals.
Ruszkowski, M, Strugala, A, Indyka, P, Tresset, G, Figlerowicz, M, and Urbanowicz, A 2022 Cryo-EM reconstructions of BMV-derived virus-like particles reveal assembly defects in the icosahedral lattice structure. Nanoscale, 14(8): 3224–3233. DOI: https://doi.org/10.1039/D1NR05650F
Miguet, J, Pasquet, M, Rouyer, F, Fang, Y, and Rio, E 2021 Marginal regeneration-induced drainage of surface bubbles. Physical Review Fluids, 6(10): L101601. DOI: https://doi.org/10.1103/PhysRevFluids.6.L101601
Leforestier, A 2021 Ordre et désordre dans les tores d’ADN analysés par cryo tomographie électronique.
Leforestier, A 2021 Curved DNA hexagonal arrays in vitro & in vivo.
Delville, Pierre Henri 2021 Nage bactérienne et émergence de mouvements collectifs (TH). Orsay, France: Université Paris-Saclay.
Mukherjee, A, de Izarra, A, Degrouard, J, Olive, E, Maiti, P K, Jang, Y H, and Lansac, Y 2021 Protamine-Controlled Reversible DNA Packaging: A Molecular Glue. ACS Nano, 15(8): 13094–13104. DOI: https://doi.org/10.1021/acsnano.1c02337
Harastani, M, Eltsov, M, Leforestier, A, and Jonic, S 2021 HEMNMA-3D: Cryo Electron Tomography Method Based on Normal Mode Analysis to Study Continuous Conformational Variability of Macromolecular Complexes. Frontiers in Molecular Biosciences, 8: 663121. DOI: https://doi.org/10.3389/fmolb.2021.663121
Barberi, L, Livolant, F, Leforestier, A, and Lenz, M 2021 Local structure of DNA toroids reveals curvature-dependent intermolecular forces. Nucleic Acids Research, 49(7): 3709–3718. DOI: https://doi.org/10.1093/nar/gkab197
Mukherjee, A, Saurabh, S, Olive, E, Jang, Y H, and Lansac, Y 2021 Protamine Binding Site on DNA: Molecular Dynamics Simulations and Free Energy Calculations with Full Atomistic Details. The Journal of Physical Chemistry B, 125(12): 3032–3044. DOI: https://doi.org/10.1021/acs.jpcb.0c09166
de Izarra, A, Choi, C, Jang, Y H, and Lansac, Y 2021 Ionic Liquid for PEDOT:PSS Treatment. Ion Binding Free Energy in Water Revealing the Importance of Anion Hydrophobicity. The Journal of Physical Chemistry B, 125(7): 1916–1923. DOI: https://doi.org/10.1021/acs.jpcb.0c10068
Marichal, L, Gargowitsch, L, Rubim, R L, Sizun, C, Kra, K, Bressanelli, S, Dong, Y, Panahandeh, S, Zandi, R, and Tresset, G 2021 Relationships between RNA topology and nucleocapsid structure in a model icosahedral virus. Biophysical Journal, 120(18): 3925–3936. DOI: https://doi.org/10.1016/j.bpj.2021.08.021
Leforestier, A 2021 HEMNMA-3D: a new method for continuous conformational variability analysis of macromolecules. Application to cryo electron tomography of nucleosomes in situ.
Leforestier, A 2020 Exploring nucleosome conforation and local order in vitro & in situ.
Chevreuil, M, Lecoq, L, Wang, S, Gargowitsch, L, Nhiri, N, Jacquet, E, Zinn, T, Fieulaine, S, Bressanelli, S, and Tresset, G 2020 Nonsymmetrical Dynamics of the HBV Capsid Assembly and Disassembly Evidenced by Their Transient Species. The Journal of Physical Chemistry B, 124(45): 9987–9995. DOI: https://doi.org/10.1021/acs.jpcb.0c05024
Sanchez-Guzman, D, Giraudon--Colas, G, Marichal, L, Boulard, Y, Wien, F, Degrouard, J, Baeza-Squiban, A, Pin, S, Renault, J P, and Devineau, S 2020 In Situ Analysis of Weakly Bound Proteins Reveals Molecular Basis of Soft Corona Formation. ACS Nano, 14(7): 9073–9088. DOI: https://doi.org/10.1021/acsnano.0c04165
Marichal, L, Degrouard, J, Gatin, A, Raffray, N, Aude, J-C, Boulard, Y, Combet, S, Cousin, F, Hourdez, S, Mary, J, Renault, J-P, and Pin, S 2020 From Protein Corona to Colloidal Self-Assembly: The Importance of Protein Size in Protein–Nanoparticle Interactions. Langmuir, 36(28): 8218–8230. DOI: https://doi.org/10.1021/acs.langmuir.0c01334
Panahandeh, S, Li, S, Marichal, L, Leite Rubim, R, Tresset, G, and Zandi, R 2020 How a Virus Circumvents Energy Barriers to Form Symmetric Shells. ACS Nano, 14(3): 3170–3180. DOI: https://doi.org/10.1021/acsnano.9b08354
Chevreuil, M 2020 Phénomènes dynamiques d’auto-assemblage et désassemblage dans des virus icosaédriques (TH). Orsay, France: Université Paris-Saclay.
Du, H, de Oliveira, F A, Albuquerque, L J C, Tresset, G, Pavlova, E, Huin, C, Guégan, P, and Giacomelli, F C 2020 Polyglycidol-Stabilized Nanoparticles as a Promising Alternative to Nanoparticle PEGylation: Polymer Synthesis and Protein Fouling Considerations. Langmuir, 36(5): 1266–1278. DOI: https://doi.org/10.1021/acs.langmuir.9b03687
Ni, M, Tresset, G, Iliescu, C, and Hauser, C A E 2020 Ultrashort Peptide Theranostic Nanoparticles by Microfluidic-Assisted Rapid Solvent Exchange. IEEE Transactions on NanoBioscience, 19(4): 627–632. DOI: https://doi.org/10.1109/TNB.2020.3007103